rs32316132 SNP Detail

Summary

• ID
  rs32316132
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:29942165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCCCAGT GCAGCCACTT
  TGGTTTTTTT GTAACGTCTT TATTTGAACC TTAGATTTGT GGTTAGGGTT TACGCATTCT
  AGGCCGTAGA ATCTCAGGAC GCTCAGCTTG CTAGGGAAGT GATACCAACT TTAAGGCAAC
  TGTTTTAGTA GAAATATTGG ACATAAAAGC CAGAGGAGGG AACAACCTAA AGAACAAGCG
  Y
  CCTGATATTT GAACTTAGTC TGTTCTTGTT TGTAAAGTAA ACCCCACAGT AGACTTACTG
  ATTCCTGGAA GGACTCCTTT GTTGTACTTT GGGATATCGC CACCACAGGC CGAATTGCCC
  TCCGGTGTGT GATTACGGTG TCATCAGTAC ACACACTTGG GTGGAGCTTT GGAATTAGGA
  AGAACATGAA AGAAATATGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47652132	NES10269265	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32316132					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47652132	NES10269265	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:29942165 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15670	CpG island 15670	511 bp distal
Del(5D5Mit348-D5Mit389)6Jcs	deletion, Chr 5, John C. Schimenti 6	within coordinates
Dnajb6	DnaJ heat shock protein family (Hsp40) member B6	within coordinates
Gm5129	predicted gene 5129	1231 bp upstream
Gm72214	predicted gene, 72214	335 bp downstream
Rr377760	regulatory region 377760	within coordinates
Rr608877	regulatory region 608877	735 bp distal
Rr608878	regulatory region 608878	1378 bp distal
Rr608879	regulatory region 608879	496 bp distal
Rr608880	regulatory region 608880	393 bp distal
Rr608881	regulatory region 608881	within coordinates
Rr608882	regulatory region 608882	997 bp proximal
Tssr45546	transcription start site region 45546	1430 bp downstream
Tssr45547	transcription start site region 45547	1416 bp downstream
Tssr45548	transcription start site region 45548	1336 bp downstream
Tssr45549	transcription start site region 45549	1317 bp downstream
Tssr45550	transcription start site region 45550	1178 bp downstream
Tssr45551	transcription start site region 45551	1156 bp downstream
Tssr45552	transcription start site region 45552	1027 bp downstream
Tssr45553	transcription start site region 45553	707 bp downstream
Tssr50466	transcription start site region 50466	1274 bp upstream
Tssr50467	transcription start site region 50467	1242 bp upstream
Tssr50468	transcription start site region 50468	1222 bp upstream
Tssr50469	transcription start site region 50469	739 bp upstream