rs32316592 SNP Detail

Summary

• ID
  rs32316592
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:10982097 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTGCTGCG TGGCGTCAGG
  GTTGTGGAGC TGGCAGGCCT GGCCCCGGGG CCGTTCTGCG GAATGGTCCT GGCGGACTTC
  GGCGCCGAGG TGGTGCGCGT GAACCGGCTG GGCTCCACGG GCGAGAATTT TCTGGCCCGA
  GGCAAGCGCT CGCTAGCGCT GGACCTGAAG CGCTCTCAGG GAGTCACGGT GTTGCGGCGC
  W
  TGTGCGCACG CGCGGACGTG TTGCTGGAGC CCTTCCGCTG CGGTGAGCCC TGCGGTGCTG
  CGAGATGACA TTCCCTCCTG CCCGATTTCT CCCAGCTTCT CTGACTCCTT CTTAAGACTT
  TTAATTTGCT TGATTCCCCC CCCCCCAGAT TTGCCTTTAT TATTTGGAGG TATTGAACCG
  TACGAGAATC TAGTGCAAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss39389465	mCV24566633	ABI	CRAMUS_MOUSE	f	SNP	T	A	A
ss147066968	ENSMUSSNP292466	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs32316592					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:10982097 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Amacr	alpha-methylacyl-CoA racemase			Coding-NonSynonymous
				Noncoding-Transcript-Variant
C1qtnf3	C1q and tumor necrosis factor related protein 3			1861 bp downstream
Gm34315	predicted gene, 34315			378 bp upstream
Rr499316	regulatory region 499316			1951 bp distal
Rr499317	regulatory region 499317			245 bp distal
Rr499318	regulatory region 499318			within coordinates
Tssr130700	transcription start site region 130700			246 bp downstream
Tssr130701	transcription start site region 130701			206 bp downstream