rs32317027 SNP Detail

Summary

• ID
  rs32317027
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:29941401 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTAAGGTGT TCCTGGTCTG GGCCGGTTGT AGATTGGGTC
  TGTGGAGAGC GTTTGCCGTT CTTGGTCAGG CCTAGCTCGG GGCTTAGCTG CGGTCCGCTT
  M
  CCTAGTTCTC TGGTCGAAGG TGGCGGTTGG GTCCGGCACG CGCTAGGTCG GCCGCAGAGC
  TCCAGGAGTA GGCAAGGCTG GTGTCACCCA GTCCTGGCGT                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47652138	NES10269259	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32317027					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47652138	NES10269259	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:29941401 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15670	CpG island 15670			within coordinates
Del(5D5Mit348-D5Mit389)6Jcs	deletion, Chr 5, John C. Schimenti 6			within coordinates
Dnajb6	DnaJ heat shock protein family (Hsp40) member B6			Intron
				Noncoding-Transcript-Variant
Gm5129	predicted gene 5129			467 bp upstream
Gm72214	predicted gene, 72214			19 bp upstream
Rr377760	regulatory region 377760			within coordinates
Rr608877	regulatory region 608877			within coordinates
Rr608878	regulatory region 608878			614 bp distal
Rr608879	regulatory region 608879			30 bp proximal
Rr608880	regulatory region 608880			269 bp proximal
Rr608881	regulatory region 608881			529 bp proximal
Rr608882	regulatory region 608882			1761 bp proximal
Tssr45546	transcription start site region 45546			666 bp downstream
Tssr45547	transcription start site region 45547			652 bp downstream
Tssr45548	transcription start site region 45548			572 bp downstream
Tssr45549	transcription start site region 45549			553 bp downstream
Tssr45550	transcription start site region 45550			414 bp downstream
Tssr45551	transcription start site region 45551			392 bp downstream
Tssr45552	transcription start site region 45552			263 bp downstream
Tssr45553	transcription start site region 45553			48 bp upstream
Tssr50466	transcription start site region 50466			510 bp upstream
Tssr50467	transcription start site region 50467			478 bp upstream
Tssr50468	transcription start site region 50468			458 bp upstream
Tssr50469	transcription start site region 50469			9 bp downstream