rs32317513 SNP Detail

Summary

• ID
  rs32317513
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:118784859 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATTCCGGCA GTGGAGGGTC GCTCCCATTG CAGGAGAGGT
  AGGCAGAGCG CTGCAAGAGC TTCCTTTTTC AAGGGTACCC AAGAATCCTC CAAGGAGAGA
  Y
  GTCTGTCCCG GACTCAAGTC AAGAGCACAG AGGAGGAGCA CAGAGGCGAG CCTTTCCAGG
  AGCAAGCTGA AGCAGATGCA AGCGAGGGGC AAGCGACTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss46131160	mCV23658034	ABI	CRAMUS_MOUSE	f	SNP	T	T	C				T		C
ss47176934	NES11577465	PERLEGEN	MM_PANEL2	f	SNP	T			T	C	C		C	C	T	T	C	T	T
ss145804468	ENSMUSSNP3772099	ENSEMBL	ENSEMBL_Sanger	f	SNP			C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs32317513					SNP	T	T	C	T	C	C	T	C	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47176934	NES11577465	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:118784859 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19631	CpG island 19631	843 bp distal
Cpgi19632	CpG island 19632	77 bp distal
Gm73654	predicted gene, 73654	within coordinates
Gpr139	G protein-coupled receptor 139	1098 bp upstream
Rr381384	regulatory region 381384	within coordinates
Rr654600	regulatory region 654600	714 bp distal
Rr654601	regulatory region 654601	within coordinates
Rr654602	regulatory region 654602	694 bp proximal
Rr654603	regulatory region 654603	931 bp proximal
Tssr74477	transcription start site region 74477	1090 bp upstream
Tssr74478	transcription start site region 74478	1064 bp upstream
Tssr74479	transcription start site region 74479	1017 bp upstream