rs32317661 SNP Detail

Summary

• ID
  rs32317661
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:17159085 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTAGGAAG AGTAAGACCC
  TGTTTCACAA AAACAAAACA CAGGCCAACG AGATGGCTCA GCAGGTAAAG GTGCTTACTG
  CCAAGCTGAC TGCCTGAGTT CAATCCCCAA GACCCACAGG CTGGAAGGAA AGAACAGACA
  CCTGAAAGCT ATCCTCTATG CACACACCAT ATACCTTGGG CAATATACAT GCATAAAATA
  Y
  GTCAATAAAT GAATAAGTAT AATAAAAATT AAGACAAAAT AAACCCCCTA ACATATAAAA
  CCTTAAAAGC AGACTCTTGG AGGAAGGTGA ATTTCTCTAC ATATTATGCT ATTCCACCCT
  GTAGATTCCT GTCTCAAACA TCCCCCTGGA CTGTCCGTCT CCTCGCTTGC CTGCTCTGTT
  TATTTCTCAC CCTGAATCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss48151455	NES12127916	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32317661					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48151455	NES12127916	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:17159085 () rs orientation: forward

Symbol	Name	Function Class
Gm24927	predicted gene, 24927	685 bp downstream
Pi4ka	phosphatidylinositol 4-kinase alpha	within coordinates
Serpind1	serine (or cysteine) peptidase inhibitor, clade D, member 1	within coordinates