rs32317899 SNP Detail

Summary

• ID
  rs32317899
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:29940579 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTTATTGA GACAGGAGCT
  TATTGTGGGA TCTGATGTCC TTCTCGGGTG TGTCCGAAGA CAGTACATTC ACATACAAAA
  AGTAAATACA TCTTTAAAAT AACCGTGTTT GAAATCTAGA CCCTGGATTC AGCACTGCGA
  GTTGGTAATG ATGAGGCCTC TCACGGTTCA CTCTAAGTCG GGCCTGCTTG TTGGGTCGGC
  Y
  GAACCTCGGG ACCACAATTC TCCAAGTCCA TAGGAGTGTG AGTCATACTA CGCTATCAGG
  TCCTTATCTC CGAATCCACT GTGTCAGAGG CTGTGAGCGT CCTTCCTCCC AGCCTGCTTC
  CGGGCAAACG CAGGCTCCTT GGTTCGGCTA CAGTCGCCTC AGGCTTTAGA GCCCTCCAGG
  CACAGAGCTT GCGCAAGGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47652150	NES10269249	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs32317899					SNP	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47652150	NES10269249	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:29940579 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15670	CpG island 15670	within coordinates
Del(5D5Mit348-D5Mit389)6Jcs	deletion, Chr 5, John C. Schimenti 6	within coordinates
Dnajb6	DnaJ heat shock protein family (Hsp40) member B6	317 bp upstream
Gm5129	predicted gene 5129	within coordinates
Gm72214	predicted gene, 72214	841 bp upstream
Rr377760	regulatory region 377760	within coordinates
Rr608877	regulatory region 608877	within coordinates
Rr608878	regulatory region 608878	187 bp proximal
Rr608879	regulatory region 608879	852 bp proximal
Rr608880	regulatory region 608880	1091 bp proximal
Rr608881	regulatory region 608881	1351 bp proximal
Tssr45546	transcription start site region 45546	144 bp upstream
Tssr45547	transcription start site region 45547	158 bp upstream
Tssr45548	transcription start site region 45548	241 bp upstream
Tssr45549	transcription start site region 45549	256 bp upstream
Tssr45550	transcription start site region 45550	386 bp upstream
Tssr45551	transcription start site region 45551	410 bp upstream
Tssr45552	transcription start site region 45552	531 bp upstream
Tssr45553	transcription start site region 45553	870 bp upstream
Tssr50466	transcription start site region 50466	302 bp downstream
Tssr50467	transcription start site region 50467	321 bp downstream
Tssr50468	transcription start site region 50468	347 bp downstream
Tssr50469	transcription start site region 50469	831 bp downstream