rs32319609 SNP Detail

Summary

• ID
  rs32319609
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:29939987 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGCAAGCA CACACACCTT
  CCACTCGTCA CTAGGCCAGA CTCCTTGATT CCTGCCATTG AGGGTGGTAG TGGGTAAGAT
  TGAGAGCAGA AAGGTGGAAG GAGAGGTGGA GGAAGGTAAA GGAAAGGGCG GGAACTTTTG
  TGCTTAGTTT TCATTTCAGT CTTGGACAGC CATCTTGTAG GGCTGAAAGT CAATTAGAAA
  M
  GAGATCTGGC CAAATTCTAT GTTTCACAAA AGGGGAAGTG TAGTGTTTGG GAACCTTGGG
  GGCAGAACAG AAGCAAGGAG ACAAGGAGCC ATTCTGGAGG GTTCTATCTG GAGTTGAGTA
  TATCCTACAT GTGAGGGAGC ATCCAAGGAT CTGTGACTTC AGATCATGGG TCTCCACATC
  TTCTGTGCTT GTCCTTCTCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47652171	NES10269317	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32319609					SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47652171	NES10269317	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:29939987 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15670	CpG island 15670	524 bp proximal
Del(5D5Mit348-D5Mit389)6Jcs	deletion, Chr 5, John C. Schimenti 6	within coordinates
Dnajb6	DnaJ heat shock protein family (Hsp40) member B6	909 bp upstream
Gm5129	predicted gene 5129	345 bp downstream
Gm72214	predicted gene, 72214	1433 bp upstream
Rr377760	regulatory region 377760	256 bp upstream
Rr608877	regulatory region 608877	209 bp proximal
Rr608878	regulatory region 608878	779 bp proximal
Rr608879	regulatory region 608879	1444 bp proximal
Rr608880	regulatory region 608880	1683 bp proximal
Rr608881	regulatory region 608881	1943 bp proximal
Tssr45546	transcription start site region 45546	736 bp upstream
Tssr45547	transcription start site region 45547	750 bp upstream
Tssr45548	transcription start site region 45548	833 bp upstream
Tssr45549	transcription start site region 45549	848 bp upstream
Tssr45550	transcription start site region 45550	978 bp upstream
Tssr45551	transcription start site region 45551	1002 bp upstream
Tssr45552	transcription start site region 45552	1123 bp upstream
Tssr45553	transcription start site region 45553	1462 bp upstream
Tssr50466	transcription start site region 50466	894 bp downstream
Tssr50467	transcription start site region 50467	913 bp downstream
Tssr50468	transcription start site region 50468	939 bp downstream
Tssr50469	transcription start site region 50469	1423 bp downstream