rs32319935 SNP Detail

Summary

• ID
  rs32319935
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43115570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGGTAGAA CACTCCCCAA
  TTGCTAATGG ACAGAGCAAA CAAAGTCCCG TGCATAGGGC GGGGCCGATG GGTTTGCAGA
  TTACCGGTGG AAGAGGTGAA GGTGTCAAGA AGATGGGGAA GAACCAGCTG GAGCCAAGGG
  TGGGTGGTCC TGGGGAAGGA TTCTCAATCC AGTGAGCAGC AGAGTTAAAT TGAAGAGCGA
  R
  TTTTGAAAGA GAAAGGACTA GTCAGCCTCG TAGGCTAGTA AGTAGGGTCC GTGAGCGTGG
  AAGGGAGGGA GTCACAAAGA GGCCAGACCA CGCAGGAGGA TAGAGCTACC TAGGAAAAGA
  GGCGGAGCGA AACCTGGAGG AGAAGTGGAG CATCCTGTGT AGAGGCAGGA TAGGGGAAGA
  TGGAAGGGCT AAGGCTGGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46131269	mCV22871789	ABI	CRAMUS_MOUSE	f	SNP	G	A	G				G		G
ss51478096	NES13969840	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G		G	G	G	G	A	G	G	G	G
ss149073714	ENSMUSSNP7171097	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32319935					SNP	G	A	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51478096	NES13969840	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43115570 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18932	CpG island 18932	135 bp distal
Cpgi18933	CpG island 18933	16 bp proximal
Gm39000	predicted gene, 39000	within coordinates
Rr400282	regulatory region 400282	115 bp downstream
Rr645966	regulatory region 645966	1282 bp distal
Rr645967	regulatory region 645967	617 bp distal
Rr645968	regulatory region 645968	44 bp distal
Rr645969	regulatory region 645969	547 bp distal
Rr645970	regulatory region 645970	124 bp proximal
Rr645971	regulatory region 645971	431 bp proximal
Tssr66010	transcription start site region 66010	125 bp downstream
Tssr72134	transcription start site region 72134	1894 bp upstream
Tssr72135	transcription start site region 72135	556 bp upstream
Vsig10l	V-set and immunoglobulin domain containing 10 like	within coordinates