rs32321011 SNP Detail

Summary

• ID
  rs32321011
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:29943299 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCACAGTG AGCTGTGTAG
  TGTTGTGTGG GTCCTTGATA CCAGTAATTC AAGAGGGTGA GGTAGAATTT TAGGTAGAGG
  CCATCTTGGC CTGTAAAGTG AGACTCTACT TCAAGCAGTA AGCCTGAGGT TAACCAGAAA
  CGAGCTGGTG AGAACAAGAC GGAAATGTTA CTGTTGTAAT TGGGCTGGTG AGGTGGTTAA
  R
  CACCTAAAGC ATAGGAAGAA GGCCTGAGGA CTAGAGTTGG AACCCAAATA AGGATGGCAG
  GAGGGCATTG ACTCAAAGTT GTCGTGTGGA CTCCACAGGT GTGCCCCTCC CCTAATGAGC
  GTGGGAGGGA GAAATGGACC ATTTTCTCCT GAAGCCACAG TGTACTGTTT CTGAGTGCTC
  CCCAAGCATG TTTAAGTCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45799679	mCV22652733	ABI	CRAMUS_MOUSE	f	SNP		G	A					A
ss47652111	NES10269204	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	G	A	G	A	A	A	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32321011					SNP	G	G	A	G	G	A	G	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47652111	NES10269204	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:29943299 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15670	CpG island 15670	1645 bp distal
Del(5D5Mit348-D5Mit389)6Jcs	deletion, Chr 5, John C. Schimenti 6	within coordinates
Dnajb6	DnaJ heat shock protein family (Hsp40) member B6	within coordinates
Gm72214	predicted gene, 72214	1469 bp downstream
Rr377760	regulatory region 377760	within coordinates
Rr608877	regulatory region 608877	1869 bp distal
Rr608879	regulatory region 608879	1630 bp distal
Rr608880	regulatory region 608880	1527 bp distal
Rr608881	regulatory region 608881	1054 bp distal
Rr608882	regulatory region 608882	within coordinates
Tssr45553	transcription start site region 45553	1841 bp downstream
Tssr50469	transcription start site region 50469	1873 bp upstream