rs32321807 SNP Detail

Summary

• ID
  rs32321807
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:29942960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGCCTTTCT AAAGAACAAG CAAATAGAAC AGAATTGTCC
  TTTCGACTTG GTTCTGCTTT GCAGGATTCT TAAAAACTGA CACTTTGAAA ATGATTGTAT
  K
  TTAAGTCTTA AATTTACCCA GGACACCATC TGGTAGTGAA GGGCCTACAG TTAAAGGCAG
  GATTTTGTAG GAGGGATTAG AGTGGCAAAT TAATATTATT                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47652117	NES10269200	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32321807					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47652117	NES10269200	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:29942960 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15670	CpG island 15670	1306 bp distal
Del(5D5Mit348-D5Mit389)6Jcs	deletion, Chr 5, John C. Schimenti 6	within coordinates
Dnajb6	DnaJ heat shock protein family (Hsp40) member B6	within coordinates
Gm72214	predicted gene, 72214	1130 bp downstream
Rr377760	regulatory region 377760	within coordinates
Rr608877	regulatory region 608877	1530 bp distal
Rr608879	regulatory region 608879	1291 bp distal
Rr608880	regulatory region 608880	1188 bp distal
Rr608881	regulatory region 608881	715 bp distal
Rr608882	regulatory region 608882	202 bp proximal
Tssr45550	transcription start site region 45550	1973 bp downstream
Tssr45551	transcription start site region 45551	1951 bp downstream
Tssr45552	transcription start site region 45552	1822 bp downstream
Tssr45553	transcription start site region 45553	1502 bp downstream
Tssr50469	transcription start site region 50469	1534 bp upstream