rs32321813 SNP Detail

Summary

• ID
  rs32321813
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:29942867 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGCCTGA TACCAAACAC
  AGAACTCTGC CTCCTGCTGG GATTAAAAAA AGGTGTGCAC CCTCTGCACC AGCCACATCT
  TTAGAATTGT AAAGAAGGCA CTTTGTTATC CCTGTCCACT ATTGGTGTGA TAGCGTGTGC
  CTTTTACATT ATTTAATACT CAAGGATGTG CGTGTACTTT TAGACCTTGT CTGATGCCTT
  Y
  CTAAAGAACA AGCAAATAGA ACAGAATTGT CCTTTCGACT TGGTTCTGCT TTGCAGGATT
  CTTAAAAACT GACACTTTGA AAATGATTGT ATGTTAAGTC TTAAATTTAC CCAGGACACC
  ATCTGGTAGT GAAGGGCCTA CAGTTAAAGG CAGGATTTTG TAGGAGGGAT TAGAGTGGCA
  AATTAATATT ATTTTCATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47652123	NES10269196	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32321813					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47652123	NES10269196	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:29942867 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15670	CpG island 15670	1213 bp distal
Del(5D5Mit348-D5Mit389)6Jcs	deletion, Chr 5, John C. Schimenti 6	within coordinates
Dnajb6	DnaJ heat shock protein family (Hsp40) member B6	within coordinates
Gm5129	predicted gene 5129	1933 bp upstream
Gm72214	predicted gene, 72214	1037 bp downstream
Rr377760	regulatory region 377760	within coordinates
Rr608877	regulatory region 608877	1437 bp distal
Rr608879	regulatory region 608879	1198 bp distal
Rr608880	regulatory region 608880	1095 bp distal
Rr608881	regulatory region 608881	622 bp distal
Rr608882	regulatory region 608882	295 bp proximal
Tssr45550	transcription start site region 45550	1880 bp downstream
Tssr45551	transcription start site region 45551	1858 bp downstream
Tssr45552	transcription start site region 45552	1729 bp downstream
Tssr45553	transcription start site region 45553	1409 bp downstream
Tssr50466	transcription start site region 50466	1976 bp upstream
Tssr50467	transcription start site region 50467	1944 bp upstream
Tssr50468	transcription start site region 50468	1924 bp upstream
Tssr50469	transcription start site region 50469	1441 bp upstream