rs32322038 SNP Detail

Summary

• ID
  rs32322038
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:126419760 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGGAGGAAG GAGGGCCGAA TCCAGAAAGA
  TAATCGACTG AAGGAGCACA GTGATGCCCA GTGCCAGAAT CAGTGGGCTC CCCACAAGCT
  TCAAATGTTT TACTATCTGA TCACTATAAT GGAGAATAAG CAACACTGAA GTGTGAGACC
  M
  TGGATGTTTT GGGAGACCAT GCTACTTAAG AGCCACATCC TCCTCTTCCC TTACCattaa
  aaaaaaaaaa aaaaaaaGTC ATCTATAGGA AGCGAGCCTG TGTGCACAAG AACATTGAGC
  ACGTGTGTGT GTGTTTCCAT GAGCGCTTCC                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45133706	mCV25029382	ABI	CRAMUS_MOUSE	f	SNP	C	C					A		C
ss60794536	NES16466674	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C	C	A	A		C	A	A	C		A
ss145430002	ENSMUSSNP7135535	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							C
ss319961019	CHEV_1_128388600	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32322038					SNP	C	C	C	C	C	C	A	C	C	A	A	C	C	A	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60794536	NES16466674	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:126419760 () rs orientation: forward

Symbol	Name	Function Class
Cpgi687	CpG island 687	505 bp proximal
Nckap5	NCK-associated protein 5	within coordinates
Rr417489	regulatory region 417489	2 bp proximal
Rr417490	regulatory region 417490	373 bp proximal
Rr417491	regulatory region 417491	709 bp proximal
Tssr13401	transcription start site region 13401	660 bp downstream
Tssr13402	transcription start site region 13402	772 bp downstream
Tssr13403	transcription start site region 13403	817 bp downstream
Tssr13404	transcription start site region 13404	840 bp downstream
Tssr13405	transcription start site region 13405	877 bp downstream