rs32333023 SNP Detail

Summary

• ID
  rs32333023
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:17435316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGCCAACT AGAGCCCCAG
  AAGGTAGATG GGTTTGCAGA CCCAGGGTGG AGACCCACAG ATAGGCTCGC CTATACATGC
  TGAGTTGAAC TGCAACCCCC TAGCCACAGC CAGGAAGGAG CAAAAGGCTT ACCTCTGACC
  TCAGGTCCCT GATGTAGGCA GAGACATGGA CACAAAGTCA TTAGCTGCTA CTGAGCACAC
  R
  CGTCAGGAAG GAGGCGAGGG GAGCCAGGGT AAGATTCAGC AAGTCTGCCA AAAACAAATG
  CAGTATTCAG TGAGTCCTGT GGCATTCAGG GCAGACCTGT TCCAAGACTT GTCCAAGACT
  TGTCCACTGT GGCTATCTGG GTCATGGTCC TGAAAACCTA GCCTTTAATC CCATCACCCT
  GAAGGCAGAG TTTGAAGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48153003	NES12122997	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32333023					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48153003	NES12122997	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:17435316 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8019	CpG island 8019	1823 bp proximal
Gm59742	predicted gene, 59742	within coordinates
Rr370058	regulatory region 370058	1779 bp upstream
Rr391410	regulatory region 391410	within coordinates
Rr512417	regulatory region 512417	603 bp proximal
Rr512418	regulatory region 512418	854 bp proximal
Rr512419	regulatory region 512419	1517 bp proximal
Smpd4	sphingomyelin phosphodiesterase 4	1902 bp upstream
Tssr137314	transcription start site region 137314	1889 bp upstream
Tssr137315	transcription start site region 137315	1991 bp upstream