rs32333458 SNP Detail

Summary

• ID
  rs32333458
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:17654129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTGTGTGT GTGTGTGTGT
  GTGTGTGTGA AGGTAAAATA GCTGAAAATA GCTGAAAATA GCTGGGACAG CAGTGGGAAG
  GGCCCAGCTG GAGGCTCTGG GAGATCTGGG GATGAAGAAG ATGACCTACC ATGAGGCCCA
  GCAACACTCC ATCGCTTTGG CCCCCACCTC CTTGGTGGGG AGTTCCCTGG GCATCTGGAC
  R
  TGAACTGACT GTCTTCATGG CTAGCTTCAT TTATAGAGCG TCCCCTGCCA CCTCCCTACA
  TCATGTGTAG AGCCTCCTCT TCATTCACGA GGATTTGGAC TCATCTGTGT ATCCCATTGT
  TAAAGCTGCT TAGCCCATTT GTGTGCATGT GTTGGTGGGG GGCAGTGAGC TCTTCTGAGT
  TCTCTAAGTC TTTCAGAGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss48153649	NES12111405	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs32333458					SNP	G	G	G	G	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48153649	NES12111405	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:17654129 () rs orientation: forward

Symbol	Name	Function Class
Car15	carbonic anhydrase 15	Intron
Fam246a	family with sequence similarity 246 member A	1257 bp downstream
Gm20518	predicted gene 20518	mRNA-UTR
Tssr140212	transcription start site region 140212	1861 bp downstream
Tssr140213	transcription start site region 140213	1908 bp downstream