rs32333875 SNP Detail

Summary

• ID
  rs32333875
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:17436281 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAGTCGAG CACCCTGAAA
  AAGGTGAGTG TTGGGCCCGC GTACCTCCTC CACTTCCCTC TCCCGCCTCT TCCCCTGACC
  ACCACTCCCC ACCCCAATTC CCTTCCACCC TGCAGAATTC GCTGCAGTCT AGCAGGTGAG
  GAGCCTCCAC AGCGCCAGCT ACTGGCCACC TCTTTCCTTG CCAGGCCCTG CAGCTCCCAG
  Y
  CTGTAGCGGC TCCAACAACC CAGGGCAAGC ATCCCGAGAG GTTTTTACAT ACTTGCTTGA
  CTTGTTCTGA GTGCTTAATG TGAATAGGGC AGTATGTTAG CCATGGGAAT GGTGTGGTGG
  AAAGCTGTCC GCTGCCTGAC GATCAGATCC CTGATAGACG GATTTAGGTA GCAGCACCCA
  GAACCGTGCC TGGCATATGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48153005	NES12122989	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32333875					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48153005	NES12122989	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:17436281 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8019	CpG island 8019	858 bp proximal
Gm59742	predicted gene, 59742	within coordinates
Rr370058	regulatory region 370058	814 bp upstream
Rr391410	regulatory region 391410	within coordinates
Rr512417	regulatory region 512417	112 bp distal
Rr512418	regulatory region 512418	within coordinates
Rr512419	regulatory region 512419	552 bp proximal
Smpd4	sphingomyelin phosphodiesterase 4	937 bp upstream
Tssr137314	transcription start site region 137314	924 bp upstream
Tssr137315	transcription start site region 137315	1026 bp upstream
Tssr137316	transcription start site region 137316	1053 bp upstream
Tssr137317	transcription start site region 137317	1072 bp upstream
Tssr137318	transcription start site region 137318	1086 bp upstream
Tssr137319	transcription start site region 137319	1113 bp upstream