rs32333881 SNP Detail

Summary

• ID
  rs32333881
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:17437175 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAACGCATG GATTAAAAGC
  GTGTGTCACC AGGGCAACAA CCTCTTTCTA GAAACTTTTC ATTTCATGTA GTCCCATTTT
  AATTCTCCAG GCTATTTCTG TGTCAGTGAA GTACAGTGTT GAAAAGTCTT GCCTATATCT
  ATTTTTCTAG ACGCGTATTC CTGTTGTCTT CTGTATTTCA GACCTTACTT TGATCCTCTC
  S
  GATTCCCGCC AAACTAAGGG GGCGTGGCAC CCGGCGCAGC TTGATGACGA CATTAGGCGC
  CGAGTGTCCG AATGGCGGCT CCCTTCTCTG AGAAGCTCGA GATTTGTGCT ATCAGCACGG
  CAGGTGAGTG GCGGGAGCCG CGCGCGAGGC AGCCCAGCAC CGTGCGGTTT TCTCGGGTCC
  CCGCCGAGGC TGGCTCCGTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss48153011	NES12122973	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	C	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs32333881					SNP	G	G	G	G	C	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48153011	NES12122973	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:17437175 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8019	CpG island 8019	within coordinates
Gm59742	predicted gene, 59742	within coordinates
Rr370058	regulatory region 370058	within coordinates
Rr391410	regulatory region 391410	682 bp downstream
Rr512417	regulatory region 512417	1006 bp distal
Rr512418	regulatory region 512418	619 bp distal
Rr512419	regulatory region 512419	within coordinates
Smpd4	sphingomyelin phosphodiesterase 4	43 bp upstream
Tssr137314	transcription start site region 137314	30 bp upstream
Tssr137315	transcription start site region 137315	132 bp upstream
Tssr137316	transcription start site region 137316	159 bp upstream
Tssr137317	transcription start site region 137317	178 bp upstream
Tssr137318	transcription start site region 137318	192 bp upstream
Tssr137319	transcription start site region 137319	219 bp upstream