rs32333883 SNP Detail

Summary

• ID
  rs32333883
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:17438075 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGACCGAAGC AAAGGCCTTC
  GGCACTGCAT GCACGCTGGC TTCGGGCGTG GGTGACAGGG CCTAAAAGCA AGAGTATCAG
  TGTCGTTGCC CTATTCGTGG AATCGTGGAA AGACCTTCGT TAGACATCTC TGATTTTTCA
  ACTGTCTGCT TCTTCTGAGG AGAGAGTTGA CTTCTTGTCT CCTTTAGATC TCTGCCCTTA
  Y
  CGAGTAGTCC ACAATTTTAT GCTGCCCTGA TCATTTCATG GTAGTTTGCA ATGTAGGTCA
  GGACTGAAAC ATTTTCAGTT TTCCTTAACA CTGAGACTGA ATTAAGAATT GGAAAAAAAA
  AAACAAAACA AAACCCAAAA CCTAAGAATT GTTTCTCTTG CCACATGGCA AAGATTGGTG
  GTCTTTCAAA ACCACAACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48153013	NES12122965	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32333883					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48153013	NES12122965	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:17438075 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi8019	CpG island 8019			67 bp distal
Gm59742	predicted gene, 59742			846 bp upstream
Rr370058	regulatory region 370058			797 bp downstream
Rr391410	regulatory region 391410			1582 bp downstream
Rr512417	regulatory region 512417			1906 bp distal
Rr512418	regulatory region 512418			1519 bp distal
Rr512419	regulatory region 512419			356 bp distal
Smpd4	sphingomyelin phosphodiesterase 4			Intron
				Noncoding-Transcript-Variant
Tssr137314	transcription start site region 137314			824 bp downstream
Tssr137315	transcription start site region 137315			761 bp downstream
Tssr137316	transcription start site region 137316			732 bp downstream
Tssr137317	transcription start site region 137317			713 bp downstream
Tssr137318	transcription start site region 137318			697 bp downstream
Tssr137319	transcription start site region 137319			663 bp downstream