rs32333961 SNP Detail

Summary

• ID
  rs32333961
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:93440170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACTG CCTTCATACA TTGCTTCTGC
  Y
  TCTATGATGT GTAATTCATC TTTTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49340267	NES12579378	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	C		C	T	T		C
ss146667246	ENSMUSSNP2644500	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss324742185	CHEV_14_93601953	CHEVERUD	SCREENING_POP	f	SNP							T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32333961					SNP	T	C	T	T	T	C	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49340267	NES12579378	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:93440170 () rs orientation: forward

Symbol	Name	Function Class
Gm17922	predicted gene, 17922	within coordinates
Pcdh9	protocadherin 9	within coordinates
Tssr129946	transcription start site region 129946	617 bp upstream
Tssr129947	transcription start site region 129947	590 bp upstream
Tssr129948	transcription start site region 129948	498 bp upstream