rs32334647 SNP Detail

Summary

• ID
  rs32334647
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:17438537 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCCTGTA GTGAGCAGGG
  CTGAGACAGA AAAGCTATCA CTAGTCCATC GGTGGCACAC AGTAGGCTCT CTGCTCTTTC
  CAGCTCTTGA TTGTTTTGTG TTTCTTACCA TAGGCACTGG GAGGTAGGAA GCTGCAGGGC
  TATGCCTAAT TTTTGGTGGT GAGTTCAAAT TCTTCCTTCA TAGAACTTCT TCATTTGTCG
  M
  AAGAAGCACA CATTACTTGC TTCACCCTTC TCTTACAGAC ACGAGATTTG TAAGGAGTTT
  GCTAGACTCT TGGCTCTGCT GATTGCTAGG TGGGTGCTGA GAAGTCTTTT GCTGTTTTTT
  ACCCTTGTTT CCTGATTTGC ATCAGCCTTG TGGGCTGTGA AGATGTATTT CCTAGTGGTG
  CTTTACCTAG CCCCCTTTGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48153017	NES12122968	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32334647					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48153017	NES12122968	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:17438537 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi8019	CpG island 8019			529 bp distal
Gm59742	predicted gene, 59742			1308 bp upstream
Rr370058	regulatory region 370058			1259 bp downstream
Rr512418	regulatory region 512418			1981 bp distal
Rr512419	regulatory region 512419			818 bp distal
Smpd4	sphingomyelin phosphodiesterase 4			Intron
				Noncoding-Transcript-Variant
Tssr137314	transcription start site region 137314			1286 bp downstream
Tssr137315	transcription start site region 137315			1223 bp downstream
Tssr137316	transcription start site region 137316			1194 bp downstream
Tssr137317	transcription start site region 137317			1175 bp downstream
Tssr137318	transcription start site region 137318			1159 bp downstream
Tssr137319	transcription start site region 137319			1125 bp downstream