rs32334649 SNP Detail

Summary

• ID
  rs32334649
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:17438580 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCATCGGT GGCACACAGT
  AGGCTCTCTG CTCTTTCCAG CTCTTGATTG TTTTGTGTTT CTTACCATAG GCACTGGGAG
  GTAGGAAGCT GCAGGGCTAT GCCTAATTTT TGGTGGTGAG TTCAAATTCT TCCTTCATAG
  AACTTCTTCA TTTGTCGCAA GAAGCACACA TTACTTGCTT CACCCTTCTC TTACAGACAC
  R
  AGATTTGTAA GGAGTTTGCT AGACTCTTGG CTCTGCTGAT TGCTAGGTGG GTGCTGAGAA
  GTCTTTTGCT GTTTTTTACC CTTGTTTCCT GATTTGCATC AGCCTTGTGG GCTGTGAAGA
  TGTATTTCCT AGTGGTGCTT TACCTAGCCC CCTTTGTGTT TGTTTTCCCA TAGTCACATA
  GTGACCAGTT CAGGCAGGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48153019	NES12122969	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32334649					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48153019	NES12122969	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:17438580 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi8019	CpG island 8019			572 bp distal
Gm59742	predicted gene, 59742			1351 bp upstream
Rr370058	regulatory region 370058			1302 bp downstream
Rr512419	regulatory region 512419			861 bp distal
Smpd4	sphingomyelin phosphodiesterase 4			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Tssr137314	transcription start site region 137314			1329 bp downstream
Tssr137315	transcription start site region 137315			1266 bp downstream
Tssr137316	transcription start site region 137316			1237 bp downstream
Tssr137317	transcription start site region 137317			1218 bp downstream
Tssr137318	transcription start site region 137318			1202 bp downstream
Tssr137319	transcription start site region 137319			1168 bp downstream