rs32334653 SNP Detail

Summary

• ID
  rs32334653
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:17439302 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTAACAAGT GCTATAGAAG
  CATTATCAAG GAGTTGCCAC CACAAAGCTA GTTCTGAAGC TGGCTACTGT GATCTGTATG
  AGTTTGCATT TTAAAAATCA AAGGAATATG TGATGTAATT TGTGCTGAGT TCAAATGTTC
  TCCTGGGCAT CCTGAAATTC TGTGGTATAG AAGATATTGA GATTTTGTCT TTGTTTTTCC
  R
  CAGTGGTTCC CTAAGGCAGC CGTTTCTTGC CGGCCCTGGG AGTCTGCTAT GGCGTTCCCT
  CACCTACAAC AGCCTAGTTT CCTTCTGGTA AGTGTCACCT GCCTTTGGAA GGTTGATGAT
  GATGGTTCTA TAGCTGAGGA ACTTAAAACT TTTTCCCACT GATTTGAAGG ACTCATTTTT
  ACGAGACAAG CTGCCTTTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48153023	NES12122943	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32334653					SNP	A	A	A	A	A	G	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48153023	NES12122943	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:17439302 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi8019	CpG island 8019			1294 bp distal
Rr512419	regulatory region 512419			1583 bp distal
Smpd4	sphingomyelin phosphodiesterase 4			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Splice-Site
Tssr137315	transcription start site region 137315			1988 bp downstream
Tssr137316	transcription start site region 137316			1959 bp downstream
Tssr137317	transcription start site region 137317			1940 bp downstream
Tssr137318	transcription start site region 137318			1924 bp downstream
Tssr137319	transcription start site region 137319			1890 bp downstream