rs32335477 SNP Detail

Summary

• ID
  rs32335477
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:17666180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAGCCTGT GGGAACAGGC
  ACAGCAGAGC AGGTCCCAGT TAAGCTGCTC CAGATGCATA GGAAAGTGGC CTGCAGAAGC
  TTGGGGCCTG TCCCAACACA CTAAGGGTTC TGCTCTGCTG AGAAGTCCCC AGGAGTGGGC
  AGGCTTAATA GGCTAACTAT ACCACAGATG GGTCATCCTG TCTAGTCTTG TTTCTGCAGA
  R
  CCTAGCAGTG GCAGGGTAGC ACAAGAAGAT TTCTAAGGAG TGGAACTATG AACTCCTTAT
  CAGGTAAACA ACAGTATCAG ATGATATAGC TTTTGCAAGT TCAAGTTTGA CTCCCACAGC
  TAACAAGCTA GAAAACTGCA GCCATGTGGC TGGTGCACAG GAAACTTTGT GACTACCCAA
  TTAGTATACG TATGTTAATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48153757	NES12110921	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32335477					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48153757	NES12110921	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:17666180 () rs orientation: forward

Symbol	Name	Function Class
Del(16Dgcr2-Hira)1Rak	deletion, Chr 16, Raju Kucherlapati 1	within coordinates
Del(16Dgcr2-Hira)3Aam	deletion, Chr 16, Alea A Mills 3	within coordinates
Dgcr2	DiGeorge syndrome critical region gene 2	within coordinates
Gm20518	predicted gene 20518	within coordinates
Rr316903	regulatory region 316903	421 bp proximal
Rr320389	regulatory region 320389	21 bp proximal