rs32335486 SNP Detail

Summary

• ID
  rs32335486
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:93438530 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTCCTTTG AAGTTGCTCA
  CATCCAGTGA TTTGCCAGCT GATATTGGTT GTCACTTTCA CACCTCAACA CAATTCAAAC
  ATATCCTTTA CCTTTGATTT TTTTCTTTTC TCTTGACATG TAAAAGCCAC AAATTGGCCT
  TTTGTTTAAA GAATTTTATA TTTTCAATTG ACTTCTTTTT TCCTGCTTAT TGAAAGTAGG
  Y
  AGAGTAGAAC CAGGGGACGT CTGACAACAA TGGCATTCAT AAACCAGCTA CACACCGCAT
  GATTTCTTCT CTTCTTTCCA TATGCCTATT TAGTTTGTAT AATTGGATAT ACCTTTTTTT
  TTACTTTATT AAAATACTGA ATTTATTTCA TATGTATATT TTTGTCTCCA TGAAATTTCC
  ACATCTGACC ACTACTATAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss49340282	NES12579471	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T		T	C	C
ss324742169	CHEV_14_93600313	CHEVERUD	SCREENING_POP	f	SNP					C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs32335486					SNP	C	C	C	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49340282	NES12579471	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:93438530 () rs orientation: forward

Symbol	Name	Function Class
Gm17922	predicted gene, 17922	1006 bp downstream
Pcdh9	protocadherin 9	within coordinates
Tssr129946	transcription start site region 129946	1012 bp downstream
Tssr129947	transcription start site region 129947	1039 bp downstream
Tssr129948	transcription start site region 129948	1131 bp downstream