rs32335489 SNP Detail

Summary

• ID
  rs32335489
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:93438170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCAAGAAT GGCAAGCATT
  TGTAGGCTTT TCAGTGCTGT GCATTTTAAA ACAATAATGG TGGAATAAAC AGTCTCTCTA
  TCAGTTACCT AGCGTGAATA TGTTTCTTGC GACACTCGAT GCGGGATTAT GTACATTAGT
  TATGAAGCCA GCAGCTTGGA GCACGATGTC AATGATTCTT CAGTGAGTTA CAATTAGATC
  Y
  TTGTACCAAC AATTAACTAT TTGTCCTGTG TTTAATAGTG AACATGGCCT CATATCACAA
  GCAATTAAGT TCTTAATAAT ACAATTAGTA GCAAGACCAA ATGCAAGCCA AAAAAGATGT
  TTTCAAATCC CCAAGGCTGT GTGAGATTAT TTATGGAGGA GTTCCTTTGA AGTTGCTCAC
  ATCCAGTGAT TTGCCAGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49340285	NES12579466	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32335489					SNP	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49340285	NES12579466	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:93438170 () rs orientation: forward

Symbol	Name	Function Class
Gm17922	predicted gene, 17922	1366 bp downstream
Pcdh9	protocadherin 9	within coordinates
Tssr129946	transcription start site region 129946	1372 bp downstream
Tssr129947	transcription start site region 129947	1399 bp downstream
Tssr129948	transcription start site region 129948	1491 bp downstream