rs32335490 SNP Detail

Summary

• ID
  rs32335490
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:93438101 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGCG ACACTCGATG CGGGATTATG
  Y
  ACATTAGTTA TGAAGCCAGC AGCTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49340286	NES12579464	PERLEGEN	MM_PANEL2	f	SNP	T			T	C	T	C		C	T	T		C
ss146667242	ENSMUSSNP1867990	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C			T
ss324742163	CHEV_14_93599884	CHEVERUD	SCREENING_POP	f	SNP								T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32335490					SNP	T	T	C	T	C	T	C	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49340286	NES12579464	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:93438101 () rs orientation: forward

Symbol	Name	Function Class
Gm17922	predicted gene, 17922	1435 bp downstream
Pcdh9	protocadherin 9	within coordinates
Tssr129946	transcription start site region 129946	1441 bp downstream
Tssr129947	transcription start site region 129947	1468 bp downstream
Tssr129948	transcription start site region 129948	1560 bp downstream