rs32335492 SNP Detail

Summary

• ID
  rs32335492
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:93438080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTATTTTG TGAAATGATT
  TTTTTACGTA TACTACTGTA TTTATTTTCA CTTCCTGTTT CATGTGCCAA GTCGTCAGGA
  CGATTAATTA CTTCAAGAAT GGCAAGCATT TGTAGGCTTT TCAGTGCTGT GCATTTTAAA
  ACAATAATGG TGGAATAAAC AGTCTCTCTA TCAGTTACCT AGCGTGAATA TGTTTCTTGC
  R
  ACACTCGATG CGGGATTATG TACATTAGTT ATGAAGCCAG CAGCTTGGAG CACGATGTCA
  ATGATTCTTC AGTGAGTTAC AATTAGATCC TTGTACCAAC AATTAACTAT TTGTCCTGTG
  TTTAATAGTG AACATGGCCT CATATCACAA GCAATTAAGT TCTTAATAAT ACAATTAGTA
  GCAAGACCAA ATGCAAGCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss49340288	NES12579462	PERLEGEN	MM_PANEL2	f	SNP	G			G	G	A		A	G	G
ss146667240	ENSMUSSNP5425956	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A		G
ss324742161	CHEV_14_93599863	CHEVERUD	SCREENING_POP	f	SNP							G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs32335492					SNP	G	G	A	G	G	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49340288	NES12579462	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:93438080 () rs orientation: forward

Symbol	Name	Function Class
Gm17922	predicted gene, 17922	1456 bp downstream
Pcdh9	protocadherin 9	within coordinates
Tssr129946	transcription start site region 129946	1462 bp downstream
Tssr129947	transcription start site region 129947	1489 bp downstream
Tssr129948	transcription start site region 129948	1581 bp downstream