rs32335493 SNP Detail

Summary

• ID
  rs32335493
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:93437963 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGAATATTT TTTAGCTAAT TATTTTGTGA AATGATTTTT
  TTACGTATAC TACTGTATTT ATTTTCACTT CCTGTTTCAT GTGCCAAGTC GTCAGGACGA
  Y
  TAATTACTTC AAGAATGGCA AGCATTTGTA GGCTTTTCAG TGCTGTGCAT TTTAAAACAA
  TAATGGTGGA ATAAACAGTC TCTCTATCAG TTACCTAGCG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49340289	NES12579461	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32335493					SNP	T	T	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49340289	NES12579461	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:93437963 () rs orientation: forward

Symbol	Name	Function Class
Gm17922	predicted gene, 17922	1573 bp downstream
Pcdh9	protocadherin 9	within coordinates
Tssr129946	transcription start site region 129946	1579 bp downstream
Tssr129947	transcription start site region 129947	1606 bp downstream
Tssr129948	transcription start site region 129948	1698 bp downstream