rs32335599 SNP Detail

Summary

• ID
  rs32335599
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:72325299 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATTCTTTtg tgtgtgtgtg tgtgtgtgtg
  tgtgtgtgtg tggtgtattt gtgtgtgtat gtgtgtTCCt gttgaagcca gaggagattg
  ctggatatcc ttctttagca ttgtcagccc tataatccct tgagacaggg tctctcactg
  R
  accaggagct tgcccccttt aactggtggg agtcacagac atcctcctgt ctggcttagc
  cagggttctg gggatttgac tggggtctta atccttgcac agaaattagt accctttcct
  gctggaccat ctccacagtc ccCTAAAAAT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss45135890	mCV24093641	ABI	CRAMUS_MOUSE	f	SNP	A	G
ss144651977	ENSMUSSNP2849510	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss319788278	CHEV_1_72332714	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs32335599					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:72325299 () rs orientation: forward

Symbol	Name	Function Class
Cpgi355	CpG island 355	1647 bp distal
Gm51631	predicted gene, 51631	678 bp downstream
Pecr	peroxisomal trans-2-enoyl-CoA reductase	1826 bp upstream
Rr412795	regulatory region 412795	1761 bp distal
Rr412796	regulatory region 412796	1146 bp distal
Rr412797	regulatory region 412797	385 bp proximal
Rr412798	regulatory region 412798	1914 bp proximal
Tmem169	transmembrane protein 169	within coordinates
Tssr114	transcription start site region 114	1861 bp upstream
Tssr115	transcription start site region 115	1847 bp upstream
Tssr116	transcription start site region 116	1827 bp upstream
Tssr7298	transcription start site region 7298	1721 bp downstream
Tssr12164	transcription start site region 12164	1912 bp upstream
Tssr12165	transcription start site region 12165	1874 bp upstream