rs32335789 SNP Detail

Summary

• ID
  rs32335789
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:17576121 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTCTCCT CTGAGAGTCT
  TTTGTGCAGC TCAGTTTCAC CTGTCTCAGC TTTTATTATT TCTCTGACAG GGAGGGACCA
  AGTGTATTTG GTCAGTTTCA AGGACTTCCT GAAACTATTT TGAATTTTTT AACCTTCCTG
  CTTAAGGAGT TTTTCTGAAG AATAGAATGC TCCAATCTTG GGGAAAACTG TTATACAAGG
  R
  GAAAACGAAT CTTCCTTTCA AATCCAGAGA CCAAAGTGGG CTTAGGTCTT TAGAATGGGA
  AGAGCTTCAT ACTATATAAA CTAGGTTTGG GGCATAGACT TTGAGATTTC TTCCTATTCT
  GCTATTCTGT ATCTCTAGAA CTTTCTAGTG GGTGACCTGT TTCAGTTGTG TTTTCCGATA
  GTCAGAAGTG ACAAGGGAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48153479	NES12113497	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32335789					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48153479	NES12113497	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:17576121 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8023	CpG island 8023	979 bp proximal
Klhl22	kelch-like 22	1364 bp upstream
Rr512444	regulatory region 512444	930 bp proximal
Rr512445	regulatory region 512445	1431 bp proximal
Tssr137329	transcription start site region 137329	907 bp upstream
Tssr137330	transcription start site region 137330	1321 bp upstream
Tssr137331	transcription start site region 137331	1344 bp upstream
Tssr137332	transcription start site region 137332	1373 bp upstream
Tssr137333	transcription start site region 137333	1430 bp upstream