rs32335918 SNP Detail

Summary

• ID
  rs32335918
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:17656363 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAACTTCAG AGCTGCTGCA
  GCCAGTGTAA CTGTTGGCAT TTCTCCCGAA GGGCGTCTGG TTATTACTCT TACAGCAGTG
  AAAATGAGTA ACAGAGACCA GGAGTGACAT GCCGAAACCA CCGTCAAAGA AATTAGTTCA
  AGAGGTGAGG GCACATTGGA TCCTACTGCC CAAGACTTAG GCTAGGAGGC ATGGCTGTTC
  Y
  TTCTCATGCT ACAAGTTTGA GATTCCAACC CGTTCCAAGT CCAGGTCCAC ATCAGCCTTC
  CTATTGATGC TCGTCTGAGG ACTACCCTCC CAAAGACAAA GGTCTCAGGA GAAGCTGCAG
  CCCTCCTGTG GTGGGGATAC TACAGTGGCT CAAGTCCCTG GCACTCTGGA GGGAAGTGTC
  TGTGCCTCCT TGGCTTCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48153679	NES12111420	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32335918					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48153679	NES12111420	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:17656363 () rs orientation: forward

Symbol	Name	Function Class
Car15	carbonic anhydrase 15	313 bp upstream
Del(16Dgcr2-Hira)1Rak	deletion, Chr 16, Raju Kucherlapati 1	1856 bp proximal
Del(16Dgcr2-Hira)3Aam	deletion, Chr 16, Alea A Mills 3	1856 bp proximal
Dgcr2	DiGeorge syndrome critical region gene 2	1856 bp downstream
Gm20518	predicted gene 20518	within coordinates
Tssr140212	transcription start site region 140212	350 bp upstream
Tssr140213	transcription start site region 140213	281 bp upstream