rs32335922 SNP Detail

Summary

• ID
  rs32335922
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:17656786 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGTCTGAG CAGGTTAGGC
  TGAACAATGA CTACCAGGGA GTGGGCTGGA GGGCTGCCCC TCTCAGTATT CCAGTTCTCA
  GCATCTCTTT CCCATGGTAT AGCTTAGTGG AAGAGTACTT GCTTAGCATG TCTCCTTGGA
  TTCTCCCTCA GCACTGCTGG AGGACCAGGC TCTTCCTTGA AGAGAGGACA GGGAGGAAAG
  R
  GCAGTGTTGG CAGAGCCCCA GGCACCCTGC TTCAGATGTG TTGAGGGTAG AATGAAGCTC
  CTGTCCCCAC CAAAGGCCTC AGCAGATCCT TCTTAACCCA ACCCCTTGCC AGCCTTTGTG
  ACAGCCTGCT GTAGTTACTG GCCCTTCTGA GTTAGGACAG TGAACTTGAT TACAGCTGAA
  AGTCTGGTTC CTGAGTTTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48153683	NES12111304	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32335922					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48153683	NES12111304	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:17656786 () rs orientation: forward

Symbol	Name	Function Class
Car15	carbonic anhydrase 15	736 bp upstream
Del(16Dgcr2-Hira)1Rak	deletion, Chr 16, Raju Kucherlapati 1	1433 bp proximal
Del(16Dgcr2-Hira)3Aam	deletion, Chr 16, Alea A Mills 3	1433 bp proximal
Dgcr2	DiGeorge syndrome critical region gene 2	1433 bp downstream
Gm20518	predicted gene 20518	within coordinates
Tssr140212	transcription start site region 140212	773 bp upstream
Tssr140213	transcription start site region 140213	704 bp upstream