rs32338315 SNP Detail

Summary

• ID
  rs32338315
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:161079362 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTCCTGGAG TTCCTTATAA AATGCTCAAC ACATTATTCC
  TAAAGTTTAA ATATAGGTTT CACAACAGGC TTCTTGAGAT CGAGTGTATG CAAGTGAATT
  Y
  CCACCTGAAG AAATGGGACA TTTTGATCCA CTGACTTCCT ATTTCCTAAG CACAAAGTGG
  AGAAAGATGC CTGCCCTTAT TAGAGACAGA TGGCAGACA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45135368	mCV24544936	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32338315					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161079362 () rs orientation: forward

Symbol	Name	Function Class
Cpgi926	CpG island 926	362 bp distal
Gm70781	predicted gene, 70781	within coordinates
Prdx6	peroxiredoxin 6	582 bp upstream
Rr372334	regulatory region 372334	1070 bp downstream
Rr396460	regulatory region 396460	443 bp downstream
Rr396461	regulatory region 396461	within coordinates
Rr421776	regulatory region 421776	1040 bp distal
Rr421777	regulatory region 421777	638 bp distal
Rr421778	regulatory region 421778	83 bp distal
Rr421779	regulatory region 421779	918 bp proximal
Tssr14577	transcription start site region 14577	883 bp upstream
Tssr14578	transcription start site region 14578	653 bp upstream
Tssr14579	transcription start site region 14579	648 bp upstream
Tssr14580	transcription start site region 14580	606 bp upstream
Tssr14581	transcription start site region 14581	264 bp upstream