rs32339186 SNP Detail

Summary

• ID
  rs32339186
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:118088698 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTATT TACCAAATAA GTATATCAAA
  R
  GTGATTGCTT CTAATAATTC GGGGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46133797	mCV27568676	ABI	CRAMUS_MOUSE	f	SNP	A	A	A					G	A
ss47171724	NES11585620	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	A	G	A			G	G	G	G	G
ss145780889	ENSMUSSNP6492475	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32339186					SNP	?	A	A	G	A	G	A	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47171724	NES11585620	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:118088698 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19620	CpG island 19620	260 bp proximal
Itpripl2	inositol 1,4,5-triphosphate receptor interacting protein-like 2	within coordinates
Rr381380	regulatory region 381380	1917 bp downstream
Rr654485	regulatory region 654485	842 bp distal
Rr654486	regulatory region 654486	932 bp distal
Tssr74439	transcription start site region 74439	1909 bp upstream
Tssr74440	transcription start site region 74440	1187 bp upstream
Tssr74441	transcription start site region 74441	1991 bp downstream