rs32339694 SNP Detail

Summary

• ID
  rs32339694
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45016012 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCTGGGC TGAGCTGAGG
  GATCCAGGCT TCTGGGCCCT GGAGGAGGCA CAAGGAGGTA GCCCGCCTGA GATACTAGGG
  TTCGGCGGGG CACTCTCAGC TCCGGGAAGG GACACGCCTG GGTCTCTTGG GTTGGCTTGT
  GAAATCTGGA CTCTGGGTTC CCTTGGGATG AAGATGGGAA TGTAGGATTT CGGGCAAGCT
  R
  GTCGGAAACG CTAGCCCAGG GGTCCCCAGG GTGGGCGCTG CCGGGCAAGC TGGGCCGGGC
  TCTTACCTAC CTGGTCCGCG ACGACTGCGG GAGGAGCTGG GCTGCAGGAG GGACGCGGGG
  TGGGGTAGGG GCACCGGGCG GGGCCCCTGG CGGCGGCCGG GGCCCGGATC TGGAGCTCTG
  GAACCCTGTC TACGCCGCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss46133895	mCV25291022	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs32339694					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45016012 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19049	CpG island 19049	within coordinates
Gm45619	predicted gene 45619	1589 bp upstream
Gm71276	predicted gene, 71276	841 bp upstream
Lin7b	lin-7 homolog B, crumbs cell polarity complex component	1303 bp downstream
Mtag2	metastasis associated gene 2	within coordinates
Ppfia3	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3	within coordinates
Rr400310	regulatory region 400310	355 bp upstream
Rr646419	regulatory region 646419	571 bp distal
Rr646420	regulatory region 646420	within coordinates
Rr646421	regulatory region 646421	116 bp proximal
Rr646422	regulatory region 646422	1099 bp proximal
Tssr72376	transcription start site region 72376	180 bp downstream