rs32339723 SNP Detail

Summary

• ID
  rs32339723
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:17729018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAACTATTT CCTTGACTCT
  CAACAGAAAA CTGGATGCCC ACTTCTGCAT TGTTTTCTTG GTTCTCAATG CTTTCCAACC
  CAAAAACAGT TGTTCCACTT CCAAGGGCGG CTGAGAGTGC CAGGACCAGA AAAAATTCAA
  AGGACTGGAC AGGAACGCGA ATAGGGGGAG GGGCCCGGAA GTCGCCAGCG CTCGCACTGA
  R
  CTGGTACCTC GATGTACTCT TCTTCATCCA GGACCCGCTG CCTGCTTCTC GCAACTCCGG
  CCTCTCCAGC CTCCCCAGCC GCGCGCTTCC TTGAGGGCGC GGACGCGGAG GACAGAAACA
  GAGCACCCGC CGAGGTCCCG GGCGTCCCCA TCGCTATCCC AGAATCGCTC GGGCGGCGTC
  TGCACCGCTC CAACAGCCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48154173	NES12108848	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32339723					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48154173	NES12108848	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:17729018 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi8031	CpG island 8031			within coordinates
Del(16Dgcr2-Hira)1Rak	deletion, Chr 16, Raju Kucherlapati 1			within coordinates
Del(16Dgcr2-Hira)3Aam	deletion, Chr 16, Alea A Mills 3			within coordinates
Ess2	ess-2 splicing factor			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Splice-Site
Gsc2	goosecoid homebox 2			1960 bp downstream
Rr404709	regulatory region 404709			154 bp upstream
Rr512484	regulatory region 512484			151 bp proximal
Rr512485	regulatory region 512485			323 bp proximal
Tssr140219	transcription start site region 140219			149 bp downstream