rs32340785 SNP Detail

Summary

• ID
  rs32340785
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:17729392 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGTTGTAGT CTTTTATCCC CACCCGCGTT GCTCATGCCC
  ATCTAGACTA TGATCACTAG GGGGAGCTGT AGAGTGACTG ACGCCACAGT CCCTCTGTTA
  M
  AAGTTCCAAT TCTTTAAAAA AAAAAAAAAA TGCAGATGCT TCAAAGACAT TTTTAAATAC
  TTCAAAAAAT TTGGTTATGA CTTCCAAACT CAGAAAAAGA                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss48154175	NES12108850	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	C	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32340785					SNP	A	A	A	A	A	C	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48154175	NES12108850	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:17729392 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8031	CpG island 8031	87 bp distal
Del(16Dgcr2-Hira)1Rak	deletion, Chr 16, Raju Kucherlapati 1	within coordinates
Del(16Dgcr2-Hira)3Aam	deletion, Chr 16, Alea A Mills 3	within coordinates
Ess2	ess-2 splicing factor	180 bp upstream
Gsc2	goosecoid homebox 2	1586 bp downstream
Rr404709	regulatory region 404709	within coordinates
Rr512484	regulatory region 512484	within coordinates
Rr512485	regulatory region 512485	30 bp distal
Tssr140219	transcription start site region 140219	174 bp upstream