rs32340787 SNP Detail

Summary

• ID
  rs32340787
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:17729763 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATCTCTGG TTGGATTTAT
  TAGTTCCCTG TCTGCCAGGA TGGGCTTCTC ACTGAAAGCA TTAGTGGAAC TTTCTTCCTA
  AGGGAGATCA TGAATTAGGT GGGAGAAGCT CTAGCCCAGA ATGATTCATT ACAATTTTGC
  TTTTCCAATG ATCTTGTCCT TCATTGTGAG TCACTGGGGA CTTTATGACC ATGTCCCTGC
  R
  TCCATAGAGT TGACCATACA GTAGAAAAAT GTTAAATCAT GCTGCCAGTG TGTAAAGTTA
  CAACTGTGAC CTGCAATAAG TCTGCACTCA GAGAATCTCA ACTGCTACAC AGGACATGTC
  AAGTGGCATT TCCCCAGGCA GAACATGGTT GTAGATGGAA AAGATGAATG GATGGGCATC
  AGGCAATGGG AAGGCCCAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48154177	NES12108851	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32340787					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48154177	NES12108851	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:17729763 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8031	CpG island 8031	458 bp distal
Del(16Dgcr2-Hira)1Rak	deletion, Chr 16, Raju Kucherlapati 1	within coordinates
Del(16Dgcr2-Hira)3Aam	deletion, Chr 16, Alea A Mills 3	within coordinates
Ess2	ess-2 splicing factor	551 bp upstream
Gsc2	goosecoid homebox 2	1215 bp downstream
Rr404709	regulatory region 404709	290 bp downstream
Rr512484	regulatory region 512484	178 bp distal
Rr512485	regulatory region 512485	401 bp distal
Tssr140219	transcription start site region 140219	545 bp upstream