rs32340932 SNP Detail

Summary

• ID
  rs32340932
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:143928529 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATCTGGGT GGACGGATGT
  GAGTGACACA CTGGGCGTTT TCCTCATGTG AATTGTACTT TTCTCTGCTA AATTCATGTG
  GTTGAAGTAG ATGAACTTAA ACTGGGGCTC CTTTTCAGAC CTGTGCAGAC ATGACATTGA
  GATGACGACC ACTGAAAGAA CAGTTATCCC AAGCACACAG GCACGGGTGA GAGTGCAGAA
  K
  GGCAATCTCA ATTCATAGTC AAAACCAAAA CTCAAGAGAC CCACGAACAG AAAATGCACA
  AACTAAAACG GAATGGCAGG GGTGGCACGG TGACTCCAAA GAGAAAGCCA AGTAGCACCA
  AGCCTGATGA CCTGAGTCAG AACCCAGGGC CCACATGATG GAGGGAGAGA CTCGACTCGA
  CTCTCGCAAA CCATTCTCTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss45768688	mCV25192123	ABI	CRAMUS_MOUSE	f	SNP	G	T
ss144605824	ENSMUSSNP1067573	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
ss321708908	CHEV_5_144752580	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs32340932					SNP	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:143928529 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ccz1	CCZ1 vacuolar protein trafficking and biogenesis associated			Intron
				Noncoding-Transcript-Variant
Tssr54387	transcription start site region 54387			896 bp downstream
Tssr54388	transcription start site region 54388			920 bp downstream
Tssr54389	transcription start site region 54389			999 bp downstream