rs32340932 SNP Detail

Summary

• ID
  rs32340932
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:143928529 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATCTGGGT GGACGGATGT
  GAGTGACACA CTGGGCGTTT TCCTCATGTG AATTGTACTT TTCTCTGCTA AATTCATGTG
  GTTGAAGTAG ATGAACTTAA ACTGGGGCTC CTTTTCAGAC CTGTGCAGAC ATGACATTGA
  GATGACGACC ACTGAAAGAA CAGTTATCCC AAGCACACAG GCACGGGTGA GAGTGCAGAA
  K
  GGCAATCTCA ATTCATAGTC AAAACCAAAA CTCAAGAGAC CCACGAACAG AAAATGCACA
  AACTAAAACG GAATGGCAGG GGTGGCACGG TGACTCCAAA GAGAAAGCCA AGTAGCACCA
  AGCCTGATGA CCTGAGTCAG AACCCAGGGC CCACATGATG GAGGGAGAGA CTCGACTCGA
  CTCTCGCAAA CCATTCTCTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss45768688	mCV25192123	ABI	CRAMUS_MOUSE	f	SNP	G	T
ss144605824	ENSMUSSNP1067573	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
ss321708908	CHEV_5_144752580	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs32340932					SNP	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:143928529 () rs orientation: forward

Symbol	Name	Function Class
Ccz1	CCZ1 vacuolar protein trafficking and biogenesis associated	within coordinates
Tssr54387	transcription start site region 54387	896 bp downstream
Tssr54388	transcription start site region 54388	920 bp downstream
Tssr54389	transcription start site region 54389	999 bp downstream