rs32341377 SNP Detail

Summary

• ID
  rs32341377
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:17746900 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCACACAT ATCCTCAAAG
  CCGCCTGGAG GGGGCAGCCC TAGCCGGCTT GGGGTGAAGC TCCCAGGAGT CTTTGCAGAC
  CTTTGGAGGC CTAAGGGTCC ACCTCCCTGC TGTCTGAAAG GAAGCAGTCG CTGGGGGTGG
  TCAGTGATCT CCCCCAGCTC TGGGTTGGCT CAGAAGCTAT CACAGGGCTT TAGCTAAAAC
  M
  GAGTGCCCAG ATATTGTACC TCCCAGTTGG AGTCCTTTGT GATTCCTTTC CCAGAAAAGG
  TTAAATGGGT TGAGGGTTGG GTGTGGACAC ATTACCCAGT ATAAACAAAA GCACTCAAAG
  GAGGCTCCTT GTAGGCAGGC GCTGTAGAGT ATTAATAGGG TAAGCCTGTA GGATAGCAGA
  GGAGAGCCTA TAGCTAGTCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48154187	NES12108337	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	C	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32341377					SNP	A	A	A	A	A	C	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48154187	NES12108337	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:17746900 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8035	CpG island 8035	304 bp distal
Del(16Dgcr2-Hira)1Rak	deletion, Chr 16, Raju Kucherlapati 1	within coordinates
Del(16Dgcr2-Hira)3Aam	deletion, Chr 16, Alea A Mills 3	within coordinates
Rr325016	regulatory region 325016	within coordinates
Rr391413	regulatory region 391413	within coordinates
Slc25a1	solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1	817 bp upstream
Tssr140224	transcription start site region 140224	1165 bp upstream
Tssr140225	transcription start site region 140225	1014 bp upstream
Tssr140226	transcription start site region 140226	821 bp upstream