rs32341630 SNP Detail

Summary

• ID
  rs32341630
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:143929033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATGTTTCA AACAATAATA
  ACATGTGATA TCTAATAAGA TAGAATTTTC CAAGGAGACG AAGTCTACTT CTTAACCAAA
  AAGTGTTTCC CCTACATGTG AGTCCTTGTA AATAACAGTC CACTGTCCAT GAAGTCCAAC
  TTATTCACCA CCTGTCCTGT TGCAGAAAAC ACTCTCTGAC CCTGGGTTAG GAGACTAACA
  S
  TTCTTCTATC TCCAGTGCTG GGAATGAGTG TGCGCTGTGT ACAGTGCTGG CCACGAGACT
  GCAGCTCTGT GCGTGTAAGA CTTTGCACAG CCTCAGTGAA AGCCACAGTG AGCTGCATCA
  GCCTCTTCCA TGAAGTGAAA TGGACATTCC GGTCGGGACC TACCTTTCCC TCTCCTAGGG
  CACATCACAG AGGGGACGGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45807166	mCV25192396	ABI	CRAMUS_MOUSE	f	SNP	G	G	C	C
ss144605842	ENSMUSSNP475755	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C	C
ss321708911	CHEV_5_144753084	CHEVERUD	SCREENING_POP	f	SNP					G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs32341630					SNP	G	G	C	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:143929033 () rs orientation: forward

Symbol	Name	Function Class
Ccz1	CCZ1 vacuolar protein trafficking and biogenesis associated	within coordinates
Tssr54387	transcription start site region 54387	392 bp downstream
Tssr54388	transcription start site region 54388	416 bp downstream
Tssr54389	transcription start site region 54389	495 bp downstream