rs32342066 SNP Detail

Summary

• ID
  rs32342066
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:149039742 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGAACCAG AAGGACAAGA
  TTGAGTTATT TAGTCAGTGA CCTTTGGCCT AGTGACTCAC TCTGCCTGCT CTTATGGTGG
  GTTATTATGA TTGGCCAGCA AAGCAGCAGT ACCTTTTGAA CTTATGGGTC GGCTAGTAAT
  GCCACAGCTA TTAATGTCAC AGCTATTAAC ATCACGGGTA ATTGTAGTGA CAATGTCAGG
  R
  CAGTTTGTGG TTTTTCTCAG AATTCAGTGT GGGGCAGGGT AAGGGAATTT TTCTGGGAAC
  TGCTGTTGGG AGCTATTAAG ACAACACAAT TGTCCTGATC TCTGAATTGG GCCTCTCCTC
  CCAAGAAGAA AAGGGGGTCA AAAGCGGGCC ACCTACGCAC CGCTCCGAGA ACAACCACAG
  ATTGTTCCAG CCCTAAGTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48154366	NES11821909	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	G	G	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32342066					SNP	A	A	A	A	A	A	G	A	G	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48154366	NES11821909	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:149039742 () rs orientation: forward

Symbol	Name	Function Class
Rr148538	regulatory region 148538	within coordinates
Tssr59643	transcription start site region 59643	1547 bp upstream