rs32342070 SNP Detail

Summary

• ID
  rs32342070
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:149041111 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTCCCAAC TCCTGTCCTT
  ATTCAGATGT TTCATGTTTG TCTGTTAACC AGTAAAGAAT GTTAAGAAGG GAAGATGCTG
  CTATCCTGTT ATCTAAACTG AGGCACACAA GTCATAAGTG TGCTGCCTGT CTTGACTTAA
  TTGACTACAT GCTGCTTGCC CACTTCTTTA TTCCTCTGTC ACCCTAAATT TCAGGTCAGA
  R
  TCCAGGAGGT GACCTGGCTG CAAAGGCTGA CTCAATGACC CTGAAATCAG GTGACCTGGA
  TAAGGCCTAG TCATCAGTGT TAACCTCCTC ATTTAATCCC TTGTGTCAAA ATATGATTGG
  TCAATGCAAC AGTCCTCCCA TTATCAGAAA GGAGCATACC ATTCATTCGA GGCAAAGGAT
  AATACATTTG GGGCTGTTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48154370	NES11821805	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32342070					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48154370	NES11821805	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:149041111 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18190	CpG island 18190	1721 bp proximal
Etfbkmt	electron transfer flavoprotein beta subunit lysine methyltransferase	1869 bp upstream
Rr145976	regulatory region 145976	1489 bp proximal
Rr148538	regulatory region 148538	1112 bp distal
Tssr59643	transcription start site region 59643	178 bp upstream
Tssr59644	transcription start site region 59644	1922 bp upstream