rs32342369 SNP Detail

Summary

• ID
  rs32342369
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117011274 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCATTTGCC TTTCCGGGCT
  TTGATCTTCC GCAGATAGAA CTCCAGCTCC TTGCCTTCGA GCACATAGCC GTCTGCTCTG
  CCACACTGGC CTGGTCGTGA GGCAATACAG GCTGAAAGAG AACAGGCAGT CTTCAGTAAA
  GGACAAGACA CTCCACGCCA CCTGTAGAAG TCCACGCTGG CCTGACACCC AGGGGGCAGG
  Y
  GTTGAAGGCC AACCGTCTCC TCAGATAACT TCATCCTCAC TTAAGAGATC AGCAGCAGAA
  CTGGACAAAG TTCTCATCAC CGAGACAGTG CCGCATCATC CCCTGCCCCC AGCTACACAA
  CCTGCTTTCC ACCCACACAG CACGTTATTA GCCACCTACA CTCACATGTA CCCCACTGAA
  CCAGGAAGGG TCCACCCACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45636314	mCV22659081	ABI	CRAMUS_MOUSE	f	SNP	C		T	C	T
ss147285188	ENSMUSSNP3957255	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32342369					SNP	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117011274 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14653	CpG island 14653	1280 bp proximal
Gm22980	predicted gene, 22980	16 bp downstream
Gm26330	predicted gene, 26330	1109 bp downstream
Rps8	ribosomal protein S8	within coordinates
Rr377051	regulatory region 377051	within coordinates
Rr398411	regulatory region 398411	1842 bp upstream
Rr598068	regulatory region 598068	748 bp distal
Snord38a	small nucleolar RNA, C/D box 38A	439 bp downstream
Snord55	small nucleolar RNA, C/D box 55	1694 bp downstream
Tssr38607	transcription start site region 38607	239 bp downstream
Tssr42956	transcription start site region 42956	1767 bp downstream
Tssr42957	transcription start site region 42957	1998 bp downstream