rs32342474 SNP Detail

Summary

• ID
  rs32342474
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:143929953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGACACAGC ACTTGGAGTC
  CTGGGCTGTT TGATTGCCCT CAGACACACC TCACTTAACC CTGAGTCCTT AGAGCGCAGG
  CACCATCCCA CCCACCCACC GCAGCAAGTG CGCTCAGGGA GGGGGTGGTC CTGCTGATCA
  CTAGTGAGAA GTAATTGAAT GCTGACAGGG AGCAGTGGGT AAAACAGCCT GGCCGTGGCT
  R
  GTGACAACAT ACTGTCCATT AAGGACAGGA CCCGGCAAGC TGCAGGGAGC TGAGCCAGTC
  AGGCTGAAGC AGACCCACTC CGGCACCTAC CGTCAATCAT GAAGCACACG GCTGCACTCA
  TGGCCTGCAG AGAGACAAAC CAGAGATGAC AATTGGTAGA GAAGAGGGGT GAGCGCTGTG
  AGCAAATGTG GCGAGCCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45791014	mCV25192406	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss144605853	ENSMUSSNP3672137	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
ss321708913	CHEV_5_144754004	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32342474					SNP	G	A	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:143929953 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ccz1	CCZ1 vacuolar protein trafficking and biogenesis associated			Intron
				Noncoding-Transcript-Variant
Tssr54387	transcription start site region 54387			519 bp upstream
Tssr54388	transcription start site region 54388			487 bp upstream
Tssr54389	transcription start site region 54389			413 bp upstream