rs32342474 SNP Detail

Summary

• ID
  rs32342474
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:143929953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGACACAGC ACTTGGAGTC
  CTGGGCTGTT TGATTGCCCT CAGACACACC TCACTTAACC CTGAGTCCTT AGAGCGCAGG
  CACCATCCCA CCCACCCACC GCAGCAAGTG CGCTCAGGGA GGGGGTGGTC CTGCTGATCA
  CTAGTGAGAA GTAATTGAAT GCTGACAGGG AGCAGTGGGT AAAACAGCCT GGCCGTGGCT
  R
  GTGACAACAT ACTGTCCATT AAGGACAGGA CCCGGCAAGC TGCAGGGAGC TGAGCCAGTC
  AGGCTGAAGC AGACCCACTC CGGCACCTAC CGTCAATCAT GAAGCACACG GCTGCACTCA
  TGGCCTGCAG AGAGACAAAC CAGAGATGAC AATTGGTAGA GAAGAGGGGT GAGCGCTGTG
  AGCAAATGTG GCGAGCCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45791014	mCV25192406	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss144605853	ENSMUSSNP3672137	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
ss321708913	CHEV_5_144754004	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32342474					SNP	G	A	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:143929953 () rs orientation: forward

Symbol	Name	Function Class
Ccz1	CCZ1 vacuolar protein trafficking and biogenesis associated	within coordinates
Tssr54387	transcription start site region 54387	519 bp upstream
Tssr54388	transcription start site region 54388	487 bp upstream
Tssr54389	transcription start site region 54389	413 bp upstream