rs32342896 SNP Detail

Summary

• ID
  rs32342896
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:149043022 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGTTTTAG AAATCAGAAT
  TCGCAGACAT GGCTCACACG AGTTGTGCAA TTGCGCTTCA TTCAGGTCTA TAGGGTCTGA
  CCTGAGGAGT CGCCAGGTTA GGGCTTCGGC GTTCCCAGTT GCCTTGGGAA CCGAGGGACA
  TCCAAAACAA AACACAGTTC GAAAGAGGGC GGAGCCGGTG CGTAAGCCCT TCGGTCCGGG
  Y
  GGCCCCGCGT TCCGCGTCTC ATTGGTTCCA AATTTCGCCG CCTTCACGTA CCCACTACGC
  TGTGTAGTTA GAGCCACGGG CTCAGTCTTC CTCTCCCGAA AAAGGAGACC TACCGTACTT
  GTTTTTTTTT TTCTCCTGCA CGTGAAGGGC GAGTTCCACT TGCTGATCGA ATAAAGTCAG
  GTAAGGCCAC AAGGACTGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48154376	NES11821777	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32342896					SNP	C	C	C	C	C	C	C	C	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48154376	NES11821777	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:149043022 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18190	CpG island 18190	within coordinates
Etfbkmt	electron transfer flavoprotein beta subunit lysine methyltransferase	within coordinates
Rr134263	regulatory region 134263	1579 bp proximal
Rr145976	regulatory region 145976	within coordinates
Tssr59643	transcription start site region 59643	1717 bp downstream
Tssr59644	transcription start site region 59644	11 bp upstream
Tssr59645	transcription start site region 59645	130 bp upstream