rs32342939 SNP Detail

Summary

• ID
  rs32342939
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:36598285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GCAGCGAACC ACCACCACCT TCAGAACTGC CAGCCTCCGC CCACAGGCGC TCCTAGAAGT
  AACTTGTAGC TGTGGCCTCC TGGACGGTGC TGGCTGGCAA ATCCTTCCAG CCAGCTGGTC
  CTCCAGTGGG CAGGTGGACT GAGAAACCTC GGGGAAACTG CCCCAGCGGT ACCTGGAGAC
  CACCCCTAAC CAGAATCAAA GGACAGGGAC GAAGGGAAGG AGGCCTGGAG GTTTCTGTGG
  TAACTTTGAG CCCCAGGGGG CAGTCCCGGA GGGGAAAAAA CACTTCAGAC CCCATAAGCA
  R
  ATCTGGAGTA TAAATCAGTC CGACAGCAGC TTTTGTTCTG GGCTAAAACG TGGCACCTGA
  GAAGTGAAGA GCAGAAGAGC AATGGGAGTA ATCGAGAATG GCAGCCCAGT TTGGTTTCAG
  TAACAATTGG GTCTTTACTG GGACACAGAA GGGCCCCTTC TCCCTCGCTG GCCAGAGCCA
  CGTTTCCCAG CTCCTTTCCA TTAGGAAACA AAGCTGTGAC CTCAGAGATA GGAGGCAGGC
  CAGCTATTGC CAGGGGTGGG CAGGGAGGGT GTCCTATGGA AGCTGGCCAG GGAGGGAGCC
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45136390	mCV27595101	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs32342939					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:36598285 () rs orientation: forward

Symbol	Name	Function Class
Cpgi148	CpG island 148	278 bp distal
D430040D24Rik	RIKEN cDNA D430040D24 gene	within coordinates
Rr409350	regulatory region 409350	1935 bp distal
Rr409351	regulatory region 409351	872 bp distal
Rr409352	regulatory region 409352	835 bp distal
Rr409353	regulatory region 409353	within coordinates
Rr409354	regulatory region 409354	1615 bp proximal
Sema4c	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	855 bp upstream
Tssr40	transcription start site region 40	1473 bp downstream
Tssr11263	transcription start site region 11263	1643 bp upstream
Tssr11264	transcription start site region 11264	992 bp upstream
Tssr11265	transcription start site region 11265	938 bp upstream
Tssr11266	transcription start site region 11266	838 bp upstream