rs32342945 SNP Detail

Summary

• ID
  rs32342945
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:41642111 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAAG GAAGGCAAGA CACAACTCCA
  Y
  CAAGCTGTTC CCTGTCCTCC ACGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45635919	mCV24873959	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C	T
ss146221002	ENSMUSSNP1840931	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		T
ss321093357	CHEV_4_41589144	CHEVERUD	SCREENING_POP	f	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32342945					SNP	C	C	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:41642111 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14161	CpG island 14161	1327 bp distal
Enho	energy homeostasis associated	1809 bp upstream
Gm12405	predicted gene 12405	864 bp upstream
Gm12406	predicted gene 12406	within coordinates
Tssr41358	transcription start site region 41358	1974 bp upstream
Tssr41359	transcription start site region 41359	1878 bp upstream
Tssr41360	transcription start site region 41360	1838 bp upstream
Tssr41361	transcription start site region 41361	1799 bp upstream
Tssr41362	transcription start site region 41362	1767 bp upstream
Tssr41363	transcription start site region 41363	1747 bp upstream
Tssr41364	transcription start site region 41364	1735 bp upstream
Tssr41365	transcription start site region 41365	1709 bp upstream