rs32343001 SNP Detail

Summary

• ID
  rs32343001
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:84585760 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAGGGGGT ACATGAGTCC
  AGGGGTGTGA CTGAAGACTA TCTGCGCCTC GAGACACTGA TTCAGAAGGT GGTGTCGCCG
  TACCTGGGCA CCTATGGTCT CTATTCCAAT GAAGGACCTT GTACCCATTC CTGTATCCTC
  GGTAGGTATT GACTAGGGCT GGGGCCACAG TGTTGGCAAA ACCAGGATCC CACAGGGGAC
  Y
  AACTACAGTC ACACAGAATG TCTGTTCCCT GCACCTGTCT AGCCTTGCTG TGTGTAGATG
  TGGACCTTCA GGGTAGACGG GGTATTGGAG GGTATCGGGC AACTCCCAGA ACAGTGATGG
  CTCTCCACAG AGACCCGCCA TGCGAAGAGC CTCCATCATC CCTGTGCTAG CTCAGAAAGG
  AATACAGAGA AAGTAGGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39391315	mCV24773976	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss148254515	ENSMUSSNP4739607	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
ss325039411	CHEV_15_84531989	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32343001					SNP	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:84585760 () rs orientation: forward

Symbol	Name	Function Class
Prr5	proline rich 5 (renal)	within coordinates
Rr304869	regulatory region 304869	560 bp distal
Rr304870	regulatory region 304870	241 bp proximal
Rr314876	regulatory region 314876	704 bp distal
Rr314877	regulatory region 314877	340 bp proximal
Rr404546	regulatory region 404546	482 bp upstream