rs32343776 SNP Detail

Summary

• ID
  rs32343776
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:149043279 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGCTGTGTA GTTAGAGCCA
  CGGGCTCAGT CTTCCTCTCC CGAAAAAGGA GACCTACCGT ACTTGTTTTT TTTTTTCTCC
  TGCACGTGAA GGGCGAGTTC CACTTGCTGA TCGAATAAAG TCAGGTAAGG CCACAAGGAC
  TGCACTACCC TTTAAAGTAG ACTCCTGTCC TTTGTTTTGG AGGAAAGTAA CGTGGTCACA
  R
  CATTGTTTGG AGTTTAACCT TTTTGTTTGC TTGGCACAGA GTCTCAGGTT GTAGTCTCTG
  GGCTGCAATG TAGCCTAGAC TGTTTCGAGT TAGAGGCAGC CCTGCCTTAC TTAGCTTCCC
  AAGTAATGAA ATTAGAGAAA TGCCCTGCAC TGTTTGCTTG TTTACGTACT TTATCTGTGT
  GTGCACGTGC GCCTGTGGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48154386	NES11821782	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32343776					SNP	A	A	A	A	A	A	G	A	A	G	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48154386	NES11821782	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:149043279 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18190	CpG island 18190	70 bp distal
Etfbkmt	electron transfer flavoprotein beta subunit lysine methyltransferase	Intron
Rr641696	regulatory region 641696	125 bp distal
Rr641697	regulatory region 641697	within coordinates
Tssr59643	transcription start site region 59643	1974 bp downstream
Tssr59644	transcription start site region 59644	162 bp downstream
Tssr59645	transcription start site region 59645	118 bp downstream