rs32344845 SNP Detail

Summary

• ID
  rs32344845
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:180470863 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTCATCATC TGTAATGGGT ACGCTCTGTG ACTTCTCAGG
  GCTGTCTCAC CTGCAGTCAC ACGGTTGTTG GTCAGCAGCC CACCAGAGCT GAGCCACTTA
  K
  GCTTTTCCTC ATGCCTGTGG TGATGGTTAA TTTTGATAGC TTGATTGCAT TGAGAAATAC
  CTAGGAGATC AGCAAAGCAC ACCTCTAGAT GTGTCTGTG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss45136897	mCV22719650	ABI	CRAMUS_MOUSE	f	SNP	G	T
ss146384528	ENSMUSSNP1010115	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs32344845					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180470863 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1114	CpG island 1114			1198 bp distal
Lin9	lin-9 DREAM MuvB core complex component			Intron
				Noncoding-Transcript-Variant
Rr424541	regulatory region 424541			1954 bp distal
Rr424542	regulatory region 424542			924 bp distal
Tssr10482	transcription start site region 10482			1924 bp downstream